Project directory

All 72 public repositories in the Kentucky Open Science GitHub organization, grouped by research area. Search looks at names, descriptions, topics, languages, and README text.

Jump to: Language models & AI tooling · Medical imaging & digital pathology · Neuroscience & EEG · Robotics, drones & sensing · Computer vision · Research & clinical informatics · Other projects · Forks of other projects

Language models & AI tooling (7)

Large language models, agent tooling, and services for using them.

  • native_research_llms Ruby · ★ 3 · updated 2026-09-22

    Registry of LLMs pretrained from scratch by universities, non-profit research institutes, and national laboratories

  • llm-ddx Python · ★ 0 · updated 2026-04-15

    No description on GitHub yet.

  • llm_factory_demos Python · ★ 0 · updated 2026-02-05

    No description on GitHub yet.

  • llm-basics Python · ★ 0 · updated 2025-05-27

    This repository contains simple examples showing how to use the OpenAI API to communicate with LLM Factory Endpoints for various AI tasks.

  • llmfactory ★ 0 · updated 2024-01-31

    No description on GitHub yet.

  • LocalLLMStructured Python · ★ 3 · updated 2023-08-05 Archived

    Code assoicated with https://arxiv.org/abs/2308.01727

  • ignitenlp Python · ★ 0 · updated 2022-04-05 Archived

    In this example, we show how to use Ignite to finetune a transformer model:

Medical imaging & digital pathology (9)

CT, whole-slide pathology images, endoscopy, and ECG.

  • chest-ct-foundation-model-benchmark Python · ★ 0 · updated 2026-09-25

    Single-protocol benchmark for chest-CT foundation models: one frozen-probe protocol, shared patient-disjoint splits, bootstrap CIs, every encoder probed by the same harness

  • DALE-CT Python · ★ 0 · updated 2026-08-26

    Training code and model release for DALE-CT (Depth-Aware Latent-Euclidean Computed Tomography) — a family of 2D slice-based Vision Transformers trained entirely from scratch on …

  • CLASSify-Connect PHP · ★ 0 · updated 2025-08-21

    CLASSify is a self-service machine learning platform developed by Aaron Mullen for the Center for Applied Artificial Intelligence located at the University of Kentucky. The …

  • ECG_Predictor Python · ★ 1 · updated 2025-09-22 Archived

    Predict them beats

  • WebSAM-React TypeScript · ★ 0 · updated 2024-08-16 Archived

    No description on GitHub yet.

  • openslide C · ★ 0 · updated 2023-04-21 Archived

    OpenSlide is a C library for reading whole slide image files (also known as virtual slides). It provides a consistent and simple API for reading files from multiple vendors.

  • pywsidi Python · ★ 0 · updated 2022-12-01 Archived

    This library allows python applications to deidentify WSI

  • OMEROPolyGen Python · ★ 0 · updated 2022-07-27 Archived

    No description on GitHub yet.

  • OMERO-ROI-BOX Python · ★ 0 · updated 2022-07-27 Archived

    No description on GitHub yet.

Neuroscience & EEG (2)

EEG signal processing and seizure detection.

  • Rat-seizure-combined Python · ★ 0 · updated 2026-05-26

    Combination of EEG and video rat seizure methods

  • EEG-Challenge-2025 Python · ★ 0 · updated 2025-11-24

    https://eeg2025.github.io/

Robotics, drones & sensing (8)

Robots, drones, LiDAR, IoT, and the sensor data they collect.

  • uav-world-model Python · ★ 0 · updated 2026-08-26

    Imagination-based UAV world model (LeWM, JEPA+SIGreg): imagines future danger from drone-POV video so a CEM planner proactively avoids turret threats before single-frame detection …

  • Temi-VOC-Datasets Python · ★ 0 · updated 2026-08-12

    VOC/smell data from ~April 2025 to September 2025 recorded by Robot Temi

  • UKy-Campus-LIDAR JavaScript · ★ 0 · updated 2026-07-18

    Extract UE 4.24.3 UKy Campus LiDAR point cloud + DTM terrain tiles + aerial imagery into open formats and view them in an interactive Three.js web viewer — no Unreal Engine …

  • HAVOC-TemiApp Java · ★ 0 · updated 2025-12-08

    HAVOC is an advanced Android application designed to transform the Temi robot into an autonomous healthcare assistant. The project leverages Large Language Models (LLMs), …

  • HAVOC-Server Python · ★ 0 · updated 2025-12-08

    This project is a monitoring system for the Healthcare Assistant with Video, Olfaction, and Conversation (HAVOC) program running on the Temi robot. It uses computer vision and …

  • smell-datasets Python · ★ 9 · updated 2024-01-06

    Unless otherwise noted, this work is derived from the Institute for Biomedical Informatics Innovation Core at the University of Kentucky.

  • LoRaWAN-Site PHP · ★ 2 · updated 2022-06-22 Archived

    No description on GitHub yet.

  • AirSimVideo Python · ★ 2 · updated 2021-11-04 Archived

    Manipulating an AirSim simulation remotely and extracting video

Computer vision (4)

Object detection and video analysis.

  • TrafficStream2026 Python · ★ 0 · updated 2026-06-18

    Lex Traffic + YOLO

  • Yolo-Person-Detection Python · ★ 0 · updated 2025-12-18

    This repository contains multiple Python scripts utilizing the YOLO model for various real-time object detection and pose estimation tasks, including fall detection and general …

  • ignitevision Python · ★ 0 · updated 2025-10-06 Archived

    In this example, we show how to use Ignite to train a neural network:

  • yolo_lesion Python · ★ 0 · updated 2022-04-26 Archived

    No description on GitHub yet.

Research & clinical informatics (2)

REDCap modules and tools for research and hospital data.

  • FlightTracker-Publication-Validator PHP · ★ 0 · updated 2026-08-21

    Once the module is enabled for a project, make sure to select Manage on the left-hand control panel for the project in the External Modules tab. Then select Configure for Flight …

  • SOAP_Notes_Flutter C++ · ★ 0 · updated 2023-07-29 Archived

    SOAP Note Flutter App

Other projects (16)

Everything that does not fit an area yet. Add GitHub topics to a repository to file it.

  • kentucky-open-science.github.io JavaScript · ★ 0 · updated 2026-10-10

    Web

  • free-claude-code Python · ★ 1 · updated 2026-09-05

    This is a fork of Alishahryar1/free-claude-code, maintained by Evan Damron. It adds an openai_compatible provider that points FCC at any OpenAI-compatible Chat Completions …

  • LLM-Wiki-Setup Python · ★ 1 · updated 2026-08-26

    Interview-driven setup kit: an AI agent builds you a provenance-tagged knowledge wiki + layered instruction stack for Claude Code, Codex, and free-claude-code, across any number …

  • endoscopy-depth-prediction Python · ★ 0 · updated 2026-08-06

    Interactive 3D depth-surface visualizations of endoscopy images and video, viewable in any browser. Two scripts, each producing a self-contained Plotly HTML file you can rotate, …

  • BDSA_Setup_Documentation ★ 0 · updated 2026-04-28

    Purpose: This guide explains how to deploy a Digital Slide Archive (DSA) instance, from a quick container-based startup to production-scale deployment considerations. It is …

  • FuturitiPOC Python · ★ 0 · updated 2026-04-10

    A conversational AI assistant for futuriti.org that helps Kentucky students and adults explore careers, education programs, and living wages through natural conversation.

  • proxy-shield Python · ★ 0 · updated 2026-04-03

    A High-Performance, Asynchronous AI Compliance Proxy.

  • CMS-Star-Rankings HTML · ★ 0 · updated 2026-01-16

    Calculate CMS Hospital STAR Rankings

  • CAAI-NAIRR-Pilot-Jupyter-Notebooks Jupyter Notebook · ★ 0 · updated 2026-01-05

    Juptyer Notebooks with example AI trainings

  • N-PEER Python · ★ 0 · updated 2026-01-05

    Repo for the LLM work for the RADOR project, like using DeepSeek to help users navigate the dashboard site.

  • cilogon-for-phpBB3 PHP · ★ 0 · updated 2025-03-05

    No description on GitHub yet.

  • DSA_OAuth_changes JavaScript · ★ 0 · updated 2024-09-20

    In digital_slide_archive/devops/dsa/provision.yaml, set the following:

  • LexTran_AIM_Grant Python · ★ 0 · updated 2024-09-05

    No description on GitHub yet.

  • langchain-caai Python · ★ 0 · updated 2024-07-04

    This library allows python applications to interface with the CAAI Embedding service.

  • kySTATS Python · ★ 1 · updated 2024-05-22

    No description on GitHub yet.

  • monai-mil Python · ★ 1 · updated 2023-05-26 Archived

    This tutorial contains a baseline method of Multiple Instance Learning (MIL) classification from Whole Slide Images (WSI). The dataset is from Prostate cANcer graDe Assessment …

Forks of other projects (24)

Upstream projects KOS has forked to adapt, patch, or deploy. Their READMEs describe the upstream project unless noted.

  • worldmonitor TypeScript · ★ 0 · updated 2026-09-26 Fork

    Real-time global intelligence dashboard. AI-powered news aggregation, geopolitical monitoring, and infrastructure tracking in a unified situational awareness interface

  • BrainSec2.0 ★ 0 · updated 2026-08-19 Fork

    Optimizing BrainSec

  • VIVO Java · ★ 0 · updated 2026-08-10 Fork

    VIVO is an extensible semantic web application for research discovery and showcasing scholarly work

  • arboverse-back HTML · ★ 0 · updated 2026-07-23 Fork

    Note: when running commands in docker, your .env needs to have the PGSQL host as db. When running code from the terminal here, you need the .env to reflect the host as localhost.

  • uni2ts ★ 0 · updated 2026-04-21 Fork

    Unified Training of Universal Time Series Forecasting Transformers

  • lorax Python · ★ 0 · updated 2026-04-16 Fork

    Multi-LoRA inference server that scales to 1000s of fine-tuned LLMs

  • clinical-trial-ranking-interface Python · ★ 1 · updated 2026-03-30 Fork

    An LLM-based system which retrieves clinical trials from clinicaltrials.gov and matches them to patient data.

  • dinov2 ★ 0 · updated 2026-03-12 Fork

    PyTorch code and models for the DINOv2 self-supervised learning method, own data set and own adapted training.

  • dinov2-I16 Jupyter Notebook · ★ 1 · updated 2026-03-12 Fork

    Patch for DinoV2 training code to support PyTorch 2.4

  • WebSAM-for-UKHC Python · ★ 0 · updated 2026-02-14 Fork

    WebSAM for UKHC is a three part package:

  • LLaMA-Factory Python · ★ 1 · updated 2026-01-14 Fork

    Easy-to-use LLM fine-tuning framework (LLaMA, BLOOM, Mistral, Baichuan, Qwen, ChatGLM)

  • warc-gpt Python · ★ 0 · updated 2025-10-22 Fork

    WARC + AI - Experimental Retrieval Augmented Generation Pipeline for Web Archive Collections.

  • AgentLaboratory Python · ★ 0 · updated 2025-09-15 Fork

    Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas

  • flighttracker-pub-service-validator ★ 0 · updated 2024-09-03 Fork

    This repo holds the documentation for REDCap's External Module Framework

  • azure-redcap-paas ★ 0 · updated 2024-06-17 Fork

    Automated deployment of REDCap with Azure Blob storage as the storage back-end

  • TrafficStreamYOLO Jupyter Notebook · ★ 0 · updated 2026-02-10 Archived Fork

    Detecting Lex traffic using YOLOv7

  • vllm Python · ★ 0 · updated 2025-12-09 Archived Fork

    A high-throughput and memory-efficient inference and serving engine for LLMs

  • MONAILabel ★ 1 · updated 2025-09-22 Archived Fork

    MONAI Label is an intelligent open source image labeling and learning tool.

  • wsi-to-dicom-converter C++ · ★ 0 · updated 2023-07-05 Archived Fork

    Conversion tool/library for converting whole slide images to DICOM

  • openslide-isyntax-integration ★ 1 · updated 2023-05-09 Archived Fork

    C library for reading virtual slide images

  • AirSim Python · ★ 0 · updated 2022-08-19 Archived Fork

    Open source simulator for autonomous vehicles built on Unreal Engine / Unity, from Microsoft AI & Research

  • isyntax2raw ★ 0 · updated 2022-07-25 Archived Fork

    iSyntax to raw format converter

  • raw2ometiff ★ 0 · updated 2022-07-07 Archived Fork

    Raw format to OME-TIFF converter

  • detectron2-custom Python · ★ 0 · updated 2022-04-29 Archived Fork

    Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.