isyntax2raw
iSyntax to raw format converter
Archived This repository is archived: read-only and no longer maintained.
Fork A fork of glencoesoftware/isyntax2raw; the README may describe the upstream project.
Overview
Python tool that uses Philips' SDK to write slides in an intermediary raw format.
The iSyntax SDK must be downloaded separately from Philips and the relevant license agreement agreed to before any conversion can take place.
As of version 0.4.0, which has a Python 3.6+ requirement, the supported iSyntax SDK versions and environments are as follows:
isyntax2raw write_tiles /path/to/input.isyntax /path/to/directory.zarr
Please see isyntax2raw write_tiles --help for detailed information.
Output tile width and height can optionally be specified; default values are detailed in --help.
Use of the Zarr file type will result in losslessly compressed output. This is the only format currently supported by the downstream raw2ometiff (as of version 0.3.0).
This package is highly sensitive to underlying hardware as well as the following configuration options:
From the project’s README on GitHub.
At a glance
| Repository | Kentucky-Open-Science/isyntax2raw |
|---|---|
| Research area | Forks of other projects |
| Primary language | None detected |
| License | BSD-3-Clause |
| Stars / forks | 0 / 0 |
| Open issues and pull requests | 0 |
| Created | 2022-08-07 |
| Last push | 2022-07-25 |
| Default branch | master |
| Forked from | glencoesoftware/isyntax2raw — iSyntax to raw format converter |
What the README covers
Top contributors
- @chris-allan (132 commits)
- @melissalinkert (25 commits)
- @kkoz (2 commits)
- @douglasrennick (1 commit)
Get the code
git clone https://github.com/Kentucky-Open-Science/isyntax2raw.git