Project directory
All 72 public repositories in the Kentucky Open Science GitHub organization, grouped by research area. Search looks at names, descriptions, topics, languages, and README text.
Jump to: Language models & AI tooling · Medical imaging & digital pathology · Neuroscience & EEG · Robotics, drones & sensing · Computer vision · Research & clinical informatics · Other projects · Forks of other projects
Language models & AI tooling (7)
Large language models, agent tooling, and services for using them.
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native_research_llms
Registry of LLMs pretrained from scratch by universities, non-profit research institutes, and national laboratories
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llm-ddx
No description on GitHub yet.
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llm_factory_demos
No description on GitHub yet.
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llm-basics
This repository contains simple examples showing how to use the OpenAI API to communicate with LLM Factory Endpoints for various AI tasks.
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llmfactory
No description on GitHub yet.
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LocalLLMStructured
Archived
Code assoicated with https://arxiv.org/abs/2308.01727
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ignitenlp
Archived
In this example, we show how to use Ignite to finetune a transformer model:
Medical imaging & digital pathology (9)
CT, whole-slide pathology images, endoscopy, and ECG.
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chest-ct-foundation-model-benchmark
Single-protocol benchmark for chest-CT foundation models: one frozen-probe protocol, shared patient-disjoint splits, bootstrap CIs, every encoder probed by the same harness
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DALE-CT
Training code and model release for DALE-CT (Depth-Aware Latent-Euclidean Computed Tomography) — a family of 2D slice-based Vision Transformers trained entirely from scratch on …
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CLASSify-Connect
CLASSify is a self-service machine learning platform developed by Aaron Mullen for the Center for Applied Artificial Intelligence located at the University of Kentucky. The …
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ECG_Predictor
Archived
Predict them beats
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WebSAM-React
Archived
No description on GitHub yet.
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openslide
Archived
OpenSlide is a C library for reading whole slide image files (also known as virtual slides). It provides a consistent and simple API for reading files from multiple vendors.
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pywsidi
Archived
This library allows python applications to deidentify WSI
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OMEROPolyGen
Archived
No description on GitHub yet.
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OMERO-ROI-BOX
Archived
No description on GitHub yet.
Neuroscience & EEG (2)
EEG signal processing and seizure detection.
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Rat-seizure-combined
Combination of EEG and video rat seizure methods
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EEG-Challenge-2025
https://eeg2025.github.io/
Robotics, drones & sensing (8)
Robots, drones, LiDAR, IoT, and the sensor data they collect.
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uav-world-model
Imagination-based UAV world model (LeWM, JEPA+SIGreg): imagines future danger from drone-POV video so a CEM planner proactively avoids turret threats before single-frame detection …
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Temi-VOC-Datasets
VOC/smell data from ~April 2025 to September 2025 recorded by Robot Temi
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UKy-Campus-LIDAR
Extract UE 4.24.3 UKy Campus LiDAR point cloud + DTM terrain tiles + aerial imagery into open formats and view them in an interactive Three.js web viewer — no Unreal Engine …
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HAVOC-TemiApp
HAVOC is an advanced Android application designed to transform the Temi robot into an autonomous healthcare assistant. The project leverages Large Language Models (LLMs), …
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HAVOC-Server
This project is a monitoring system for the Healthcare Assistant with Video, Olfaction, and Conversation (HAVOC) program running on the Temi robot. It uses computer vision and …
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smell-datasets
Unless otherwise noted, this work is derived from the Institute for Biomedical Informatics Innovation Core at the University of Kentucky.
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LoRaWAN-Site
Archived
No description on GitHub yet.
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AirSimVideo
Archived
Manipulating an AirSim simulation remotely and extracting video
Computer vision (4)
Object detection and video analysis.
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TrafficStream2026
Lex Traffic + YOLO
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Yolo-Person-Detection
This repository contains multiple Python scripts utilizing the YOLO model for various real-time object detection and pose estimation tasks, including fall detection and general …
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ignitevision
Archived
In this example, we show how to use Ignite to train a neural network:
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yolo_lesion
Archived
No description on GitHub yet.
Research & clinical informatics (2)
REDCap modules and tools for research and hospital data.
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FlightTracker-Publication-Validator
Once the module is enabled for a project, make sure to select Manage on the left-hand control panel for the project in the External Modules tab. Then select Configure for Flight …
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SOAP_Notes_Flutter
Archived
SOAP Note Flutter App
Other projects (16)
Everything that does not fit an area yet. Add GitHub topics to a repository to file it.
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kentucky-open-science.github.io
Web
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free-claude-code
This is a fork of Alishahryar1/free-claude-code, maintained by Evan Damron. It adds an openai_compatible provider that points FCC at any OpenAI-compatible Chat Completions …
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LLM-Wiki-Setup
Interview-driven setup kit: an AI agent builds you a provenance-tagged knowledge wiki + layered instruction stack for Claude Code, Codex, and free-claude-code, across any number …
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endoscopy-depth-prediction
Interactive 3D depth-surface visualizations of endoscopy images and video, viewable in any browser. Two scripts, each producing a self-contained Plotly HTML file you can rotate, …
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BDSA_Setup_Documentation
Purpose: This guide explains how to deploy a Digital Slide Archive (DSA) instance, from a quick container-based startup to production-scale deployment considerations. It is …
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FuturitiPOC
A conversational AI assistant for futuriti.org that helps Kentucky students and adults explore careers, education programs, and living wages through natural conversation.
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proxy-shield
A High-Performance, Asynchronous AI Compliance Proxy.
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CMS-Star-Rankings
Calculate CMS Hospital STAR Rankings
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CAAI-NAIRR-Pilot-Jupyter-Notebooks
Juptyer Notebooks with example AI trainings
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N-PEER
Repo for the LLM work for the RADOR project, like using DeepSeek to help users navigate the dashboard site.
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cilogon-for-phpBB3
No description on GitHub yet.
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DSA_OAuth_changes
In digital_slide_archive/devops/dsa/provision.yaml, set the following:
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LexTran_AIM_Grant
No description on GitHub yet.
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langchain-caai
This library allows python applications to interface with the CAAI Embedding service.
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kySTATS
No description on GitHub yet.
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monai-mil
Archived
This tutorial contains a baseline method of Multiple Instance Learning (MIL) classification from Whole Slide Images (WSI). The dataset is from Prostate cANcer graDe Assessment …
Forks of other projects (24)
Upstream projects KOS has forked to adapt, patch, or deploy. Their READMEs describe the upstream project unless noted.
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worldmonitor
Fork
Real-time global intelligence dashboard. AI-powered news aggregation, geopolitical monitoring, and infrastructure tracking in a unified situational awareness interface
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BrainSec2.0
Fork
Optimizing BrainSec
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VIVO
Fork
VIVO is an extensible semantic web application for research discovery and showcasing scholarly work
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arboverse-back
Fork
Note: when running commands in docker, your .env needs to have the PGSQL host as db. When running code from the terminal here, you need the .env to reflect the host as localhost.
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uni2ts
Fork
Unified Training of Universal Time Series Forecasting Transformers
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lorax
Fork
Multi-LoRA inference server that scales to 1000s of fine-tuned LLMs
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clinical-trial-ranking-interface
Fork
An LLM-based system which retrieves clinical trials from clinicaltrials.gov and matches them to patient data.
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dinov2
Fork
PyTorch code and models for the DINOv2 self-supervised learning method, own data set and own adapted training.
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dinov2-I16
Fork
Patch for DinoV2 training code to support PyTorch 2.4
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WebSAM-for-UKHC
Fork
WebSAM for UKHC is a three part package:
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LLaMA-Factory
Fork
Easy-to-use LLM fine-tuning framework (LLaMA, BLOOM, Mistral, Baichuan, Qwen, ChatGLM)
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warc-gpt
Fork
WARC + AI - Experimental Retrieval Augmented Generation Pipeline for Web Archive Collections.
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AgentLaboratory
Fork
Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas
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flighttracker-pub-service-validator
Fork
This repo holds the documentation for REDCap's External Module Framework
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azure-redcap-paas
Fork
Automated deployment of REDCap with Azure Blob storage as the storage back-end
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TrafficStreamYOLO
Archived Fork
Detecting Lex traffic using YOLOv7
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vllm
Archived Fork
A high-throughput and memory-efficient inference and serving engine for LLMs
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MONAILabel
Archived Fork
MONAI Label is an intelligent open source image labeling and learning tool.
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wsi-to-dicom-converter
Archived Fork
Conversion tool/library for converting whole slide images to DICOM
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openslide-isyntax-integration
Archived Fork
C library for reading virtual slide images
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AirSim
Archived Fork
Open source simulator for autonomous vehicles built on Unreal Engine / Unity, from Microsoft AI & Research
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isyntax2raw
Archived Fork
iSyntax to raw format converter
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raw2ometiff
Archived Fork
Raw format to OME-TIFF converter
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detectron2-custom
Archived Fork
Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.