wsi-to-dicom-converter
Conversion tool/library for converting whole slide images to DICOM
Archived This repository is archived: read-only and no longer maintained.
Fork A fork of GoogleCloudPlatform/wsi-to-dicom-converter; the README may describe the upstream project.
Overview
This repository contains a tool that converts whole slide images (WSIs) to DICOM. To read the underlying whole slide images (WSIs), this tool relies on OpenSlide, which supports a variety of file formats.
To download the latest release, on the Releases tab, download the installer for your operating system and then run it. For example, if you're running on a Debian-based system, download the wsi2dcm_x.y.z.deb file and then run:
Note: if you get an error about missing shared libraries, run sudo ldconfig or make sure that /usr/local/lib is in your LD_LIBRARY_PATH.
You may also need to install the following packages and their dependencies with sudo apt-get install:
If an installer isn't available for your operating system, see Compiling from source.
After you have installed the WSI to DICOM converter, to convert a file, run the following command:
Test data is freely available from OpenSlide.
From the project’s README on GitHub.
At a glance
| Repository | Kentucky-Open-Science/wsi-to-dicom-converter |
|---|---|
| Research area | Forks of other projects |
| Primary language | C++ |
| Languages | C++ 92%, Shell 6%, CMake 0.8%, C 0.8%, Ruby 0.3%, Dockerfile 0.1% |
| License | Apache-2.0 |
| Stars / forks | 0 / 0 |
| Open issues and pull requests | 0 |
| Created | 2023-07-05 |
| Last push | 2023-07-05 |
| Default branch | develop |
| Forked from | GoogleCloudPlatform/wsi-to-dicom-converter — Conversion tool/library for converting whole slide images to DICOM |
What the README covers
Top contributors
- @Philbrick (271 commits)
- @danielbeaudreau (32 commits)
- @dzelemba (29 commits)
- @pavertomato (28 commits)
- @codybum (19 commits)
- @SibgatullinAP (4 commits)
- @kourtneyshort (2 commits)
- @fedorov (1 commit)
- @malaterre (1 commit)
Get the code
git clone https://github.com/Kentucky-Open-Science/wsi-to-dicom-converter.git